MATLAB is a commercial data analysis and numerical simulation package that can be used for many things, including financial calculations, curve fitting, image processing, statistics, and signal analysis. Brandeis has a full site license.
Page of tools for analyzing the alignment of three or more biological sequences (protein or nucleic acid) of similar length. From the output, homology can be inferred and the evolutionary relationships between the sequences studied.
"The last alignment program you'll ever need"
Allows hundreds of thousands of sequences to be aligned in only a few hours. It will also make use of multiple processors, where present. In addition, the quality of alignments is superior to previous versions, as measured by a range of popular benchmarks.
Open source platform designed for gene analysis and discovery. Bioinformatcs tools for gene discovery and prediction of biological function of genes are developed by community experts, curated for quality, and monitored for functionality..
GenePattern provides hundreds of analytical tools for the analysis of gene expression (RNA-seq and microarray), sequence variation and copy number, proteomic, flow cytometry, and network analysis. These tools are all available through a Web interface with no programming experience required.
Cn3D ("see in 3D"): web-based app to view 3-dimensional structures from NCBI's Entrez Structure database. Windows, Mac, Unix compatible. Simultaneously displays structure, sequence, and alignment, and now has powerful annotation and alignment editing features.